Struct rustcoalescence_algorithms_gillespie::event_skipping::EventSkippingAlgorithm

pub struct EventSkippingAlgorithm {}

Trait Implementations

impl<'p, O: Scenario<M, G>, R: Reporter, P: LocalPartition<'p, R>, M: MathsCore, G: SplittableRng<M>> Algorithm<'p, M, G, O, R, P> for EventSkippingAlgorithm

where O::LineageStore<GillespieLineageStore<M, O::Habitat>>: GloballyCoherentLineageStore<M, O::Habitat>, O::DispersalSampler: SeparableDispersalSampler<M, O::Habitat, G>,

fn resume_and_simulate<I: Iterator<Item = u64>, L: ExactSizeIterator<Item = Lineage>>( args: Self::Arguments, rng: G, scenario: ScenarioCogs<M, G, O>, pre_sampler: OriginPreSampler<M, I>, lineages: L, resume_after: Option<NonNegativeF64>, pause_before: Option<NonNegativeF64>, local_partition: &mut P ) -> Result<SimulationOutcome<M, G>, ResumeError<Self::Error>>

Errors

Returns a ContinueError::Sample if initialising the resuming simulation failed

fn fixup_for_restart<I: Iterator<Item = u64>, L: ExactSizeIterator<Item = Lineage>>( args: Self::Arguments, rng: G, scenario: ScenarioCogs<M, G, O>, pre_sampler: OriginPreSampler<M, I>, lineages: L, restart_at: PositiveF64, fixup_strategy: RestartFixUpStrategy, local_partition: &mut P ) -> Result<SimulationOutcome<M, G>, ResumeError<Self::Error>>

Errors

Returns a ContinueError<Self::Error> if fixing up the restarting simulation (incl. running the algorithm) failed

type LineageStore = <O as Scenario<M, G>>::LineageStore<GillespieLineageStore<M, <O as Scenario<M, G>>::Habitat>>

fn get_logical_partition( args: &Self::Arguments, local_partition: &P ) -> Partition

fn initialise_and_simulate<I: Iterator<Item = u64>>( args: Self::Arguments, rng: G, scenario: ScenarioCogs<M, G, O>, pre_sampler: OriginPreSampler<M, I>, pause_before: Option<NonNegativeF64>, local_partition: &mut P ) -> Result<SimulationOutcome<M, G>, Self::Error>

Errors

impl AlgorithmDefaults for EventSkippingAlgorithm

type MathsCore = IntrinsicsMathsCore

type Rng<M: MathsCore> = Pcg<M>

impl<M: MathsCore, G: SplittableRng<M>, O: Scenario<M, G>, R: Reporter> AlgorithmDispatch<M, G, O, R> for EventSkippingAlgorithm

where O::LineageStore<GillespieLineageStore<M, O::Habitat>>: GloballyCoherentLineageStore<M, O::Habitat>, O::DispersalSampler: SeparableDispersalSampler<M, O::Habitat, G>,

type Algorithm<'p, P: LocalPartition<'p, R>> = EventSkippingAlgorithm

fn get_logical_partition_size<P: Partitioning>( args: &Self::Arguments, partitioning: &P ) -> PartitionSize

impl AlgorithmParamters for EventSkippingAlgorithm

type Arguments = GillespieArguments

type Error = !