use std::marker::PhantomData;
use serde::{Deserialize, Serialize};
use necsim_core::cogs::{LineageStore, MathsCore, RngCore};
use necsim_core_bond::{NonNegativeF64, OpenClosedUnitF64 as PositiveUnitF64};
use necsim_partitioning_core::partition::Partition;
use necsim_impls_no_std::{
cogs::{
dispersal_sampler::almost_infinite_normal::AlmostInfiniteNormalDispersalSampler,
habitat::almost_infinite::AlmostInfiniteHabitat,
lineage_store::coherent::globally::singleton_demes::SingletonDemesLineageStore,
origin_sampler::{
pre_sampler::OriginPreSampler, singleton_demes::SingletonDemesOriginSampler,
},
speciation_probability::uniform::UniformSpeciationProbability,
turnover_rate::uniform::UniformTurnoverRate,
},
decomposition::radial::RadialDecomposition,
};
use crate::{Scenario, ScenarioCogs, ScenarioParameters};
use super::Sample;
#[allow(clippy::module_name_repetitions, clippy::empty_enum)]
pub enum AlmostInfiniteNormalDispersalScenario {}
#[derive(Debug, Serialize, Deserialize)]
#[allow(clippy::module_name_repetitions)]
#[serde(rename = "AlmostInfiniteNormalDispersal")]
pub struct AlmostInfiniteNormalDispersalArguments {
pub sample: Sample,
pub sigma: NonNegativeF64,
}
impl ScenarioParameters for AlmostInfiniteNormalDispersalScenario {
type Arguments = AlmostInfiniteNormalDispersalArguments;
type Error = !;
}
impl<M: MathsCore, G: RngCore<M>> Scenario<M, G> for AlmostInfiniteNormalDispersalScenario {
type Decomposition = RadialDecomposition;
type DecompositionAuxiliary = ();
type DispersalSampler = AlmostInfiniteNormalDispersalSampler<M, G>;
type Habitat = AlmostInfiniteHabitat<M>;
type LineageStore<L: LineageStore<M, Self::Habitat>> =
SingletonDemesLineageStore<M, Self::Habitat>;
type OriginSampler<'h, I: Iterator<Item = u64>> = SingletonDemesOriginSampler<'h, M, Self::Habitat, I> where G: 'h;
type OriginSamplerAuxiliary = (Sample,);
type SpeciationProbability = UniformSpeciationProbability;
type TurnoverRate = UniformTurnoverRate;
fn new(
args: Self::Arguments,
speciation_probability_per_generation: PositiveUnitF64,
) -> Result<ScenarioCogs<M, G, Self>, Self::Error> {
let habitat = AlmostInfiniteHabitat::default();
let dispersal_sampler = AlmostInfiniteNormalDispersalSampler::new(args.sigma);
let turnover_rate = UniformTurnoverRate::default();
let speciation_probability =
UniformSpeciationProbability::new(speciation_probability_per_generation.into());
Ok(ScenarioCogs {
habitat,
dispersal_sampler,
turnover_rate,
speciation_probability,
origin_sampler_auxiliary: (args.sample,),
decomposition_auxiliary: (),
_marker: PhantomData::<(M, G, Self)>,
})
}
fn sample_habitat<'h, I: Iterator<Item = u64>>(
habitat: &'h Self::Habitat,
pre_sampler: OriginPreSampler<M, I>,
(sample,): Self::OriginSamplerAuxiliary,
) -> Self::OriginSampler<'h, I>
where
G: 'h,
{
sample.into_origin_sampler(habitat, pre_sampler)
}
fn decompose(
_habitat: &Self::Habitat,
subdomain: Partition,
_auxiliary: Self::DecompositionAuxiliary,
) -> Self::Decomposition {
RadialDecomposition::new(subdomain)
}
}