#![deny(clippy::pedantic)]
use std::{
convert::TryFrom,
fmt,
fs::{File, OpenOptions},
io::{self, BufWriter, Write},
path::PathBuf,
};
use serde::{Deserialize, Serialize};
use necsim_core::{
impl_finalise, impl_report, landscape::IndexedLocation, lineage::GlobalLineageReference,
reporter::Reporter,
};
necsim_plugins_core::export_plugin!(Csv => CsvReporter);
#[allow(clippy::module_name_repetitions)]
#[derive(Deserialize)]
#[serde(try_from = "CsvReporterArgs")]
pub struct CsvReporter {
output: PathBuf,
writer: Option<BufWriter<File>>,
}
impl fmt::Debug for CsvReporter {
fn fmt(&self, fmt: &mut fmt::Formatter) -> fmt::Result {
fmt.debug_struct(stringify!(CsvReporter))
.field("output", &self.output)
.finish_non_exhaustive()
}
}
impl serde::Serialize for CsvReporter {
fn serialize<S: serde::Serializer>(&self, serializer: S) -> Result<S::Ok, S::Error> {
CsvReporterArgs {
output: self.output.clone(),
}
.serialize(serializer)
}
}
#[derive(Serialize, Deserialize)]
#[serde(deny_unknown_fields)]
struct CsvReporterArgs {
output: PathBuf,
}
impl TryFrom<CsvReporterArgs> for CsvReporter {
type Error = io::Error;
fn try_from(args: CsvReporterArgs) -> Result<Self, Self::Error> {
let file = OpenOptions::new()
.create(true)
.append(true)
.open(&args.output)?;
std::mem::drop(file);
Ok(Self {
output: args.output,
writer: None,
})
}
}
impl Reporter for CsvReporter {
impl_report!(speciation(&mut self, speciation: Used) {
self.write_event(
&speciation.global_lineage_reference,
speciation.event_time.get(), &speciation.origin, 's'
);
});
impl_report!(dispersal(&mut self, dispersal: Used) {
self.write_event(
&dispersal.global_lineage_reference,
dispersal.event_time.get(), &dispersal.origin, 'd'
);
});
impl_report!(progress(&mut self, _progress: Ignored) {});
impl_finalise!((mut self) {
if let Some(writer) = &mut self.writer {
std::mem::drop(writer.flush());
}
});
fn initialise(&mut self) -> Result<(), String> {
if self.writer.is_some() {
return Ok(());
}
let result = (|| -> io::Result<BufWriter<File>> {
let file = OpenOptions::new()
.create(true)
.truncate(true)
.write(true)
.open(&self.output)?;
let mut writer = BufWriter::new(file);
writeln!(writer, "reference,time,x,y,index,type")?;
Ok(writer)
})();
match result {
Ok(writer) => {
self.writer = Some(writer);
Ok(())
},
Err(err) => Err(err.to_string()),
}
}
}
impl CsvReporter {
fn write_event(
&mut self,
reference: &GlobalLineageReference,
time: f64,
origin: &IndexedLocation,
r#type: char,
) {
if let Some(writer) = &mut self.writer {
std::mem::drop(writeln!(
writer,
"{},{},{},{},{},{}",
reference,
time,
origin.location().x(),
origin.location().y(),
origin.index(),
r#type,
));
}
}
}